MSTmap -- A software tool for constructing genetic linkage maps

Online Tool

Please follow the steps below to specify the input file as well as various options for MSTmap. Note, the input file must be in the tab-delimited text format. Please refer to help for the detailed instructions on how to assemble the input file.

Step 1: Input Genotype File

Upload the input genotype file (in tab delimited text format, up to 100 MB). Refer to sample.txt for an example, or click here to load this file as input below.

Choose a file…

Step 2: Specify Options for MSTmap

Grouping LOD Criteria

No. mapping size threshold

No. mapping missing threshold (%)

Genetic mapping function

Population type

Note: Using DH for a RIL population will result in about a 2x inflation of map distances.

No. mapping distance threshold (cM)

Try to detect genotyping errors

Note: We recommend leaving this option as "No" unless your data is low quality.

Step 3: Receive Output

Optionally, enter your email address for notification

You will be redirected to a new page to wait for your results shortly. If input, an alert email will be sent.

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